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Natalia Gogoleva – University of Innsbruck

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Natalia Gogoleva



Present position:

PostDoc

Research area:
Aquatic Evolutionary Ecology

Phone:

e-mail:

+43 512 507-50248

Natalia.Gogoleva@uibk.ac.at

Academic History · Skills · Research interests · Teaching · Publications

 

 

Academic History

Skills

Genomics, transcriptomics, metagenomics: Oxford Nanopore Technology – DNA, cDNA libraries preparation and sequencing; Illumina Sequencing Platforms – different protocols of DNA, cDNA, amplicon libraries preparation and sequencing.

Molecular Biology Techniques: DNA and RNA isolation and preparation; PCR; qPCR; RT qPCR; gel electrophoresis (PAAG, agarose; DNA, Protein); plasmid construction; bacterial transformation (CaCl2 and electroporation); cloning and heterologous expression of proteins, site-directional mutagenesis; bacterial genome editing using of ‘suicide’ vectors for allelic exchange.

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Research interests

My research interest is related to the molecular mechanisms of the host/microbial interactions and microbial adaptation to extreme environmental conditions, interactions in microbial communities. 

Teaching

Parasitology SS 2024

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Publications

2024

  • Gogoleva N.E., Nasyrova M.A., Balkin A.S., Chervyatsova O.Y., Kuzmina L.Y., Shagimardanova E.I., Gogolev, Y.V.; Plotnikov A.O. (2024). Flourishing in Darkness: Protist Communities of Water Sites in Shulgan-Tash Cave (Southern Urals, Russia). Diversity 16: 526. https://doi.org/10.3390/d16090526
  • Potekhin A., Plotnikov A.O., Gogoleva N., Sonntag B. (2024). Editorial: Microbial associations formed and hosted by protists, algae, and fungi. Front. Microbiol. 14:1341058. doi: 10.3389/fmicb.2023.1341058

2023

  • Gogoleva N., Chervyatsova O., Balkin A., Kuzmina L., Shagimardanova E., Kiseleva D., Gogolev Y. (2023). Microbial tapestry of the Shulgan-Tash cave (Southern Ural, Russia): influences of environmental factors on the taxonomic composition of the cave biofilms, Environmental Microbiome 18: 82, https://doi.org/10.1186/s40793-023-00538-1

  • Malygina, A.; Balkin, A.; Polyakova, E.; Stefanov, S.; Potekhin, A.; Gogoleva, N. (2023). Taxonomic Diversity of the Microbial Biofilms Collected along the Thermal Streams on Kunashir Island. Ecologies,  4: 106-123. https://doi.org/10.3390/ecologies4010009

  • Tsers, I., Marenina, E., Meshcherov, A., ,. Gogoleva N et al. (2023). First genome-scale insights into the virulence of the snow mold causal fungus Microdochium nivale. IMA Fungus, 14, 2 https://doi.org/10.1186/s43008-022-00107-0

(2017-2022)

  • Pudova D.S., Toymentseva A.A., Gogoleva N.E., Shagimardanova E.I., Mardanova A.M., Sharipova M.R. (2022). Comparative Genome Analysis of Two Bacillus pumilus Strains Producing High Level of Extracellular Hydrolases. Genes 13(3):409. doi: 10.3390/genes13030409.

  • Miyata Y., Tokumoto S., Arai T., Shaikhutdinov N., Deviatiiarov R., Fuse H., Gogoleva N., Garushyants S., Cherkasov A., Ryabova A., Gazizova G., Cornette R., Shagimardanova E., Gusev O., Kikawada T. (2022). Identification of Genomic Safe Harbors in the Anhydrobiotic Cell Line, Pv11. Genes 13(3):406. doi: 10.3390/genes13030406.

  • Gorshkov V., Parfirova O., Petrova O., Gogoleva N., Kovtunov E., Vorob’ev V., Gogolev Y. (2021). The knockout of enterobactin-related gene in pectobacterium atrosepticum results in reduced stress resistance and virulence towards the primed plants, International Journal of Molecular Sciences 22 (17), doi: 10.3390/ijms22179594

  • Balkin A.S., Plotnikov A.O., Gogoleva N.E., Gogolev Y.V., Demchenko K.N., Cherkasov S.V. (2021). Cappable‐seq reveals specific patterns of metabolism and virulence for salmonella typhimurium intracellular survival within acanthamoeba castellanii, International Journal of Molecular Sciences, 22 (16), doi: 10.3390/ijms22169077

  • Adameyko K.I., Burakov A.V., Finoshin A.D., Mikhailov K.V., Kravchuk O.I., Kozlova O.S., Gornostaev N.G., Cherkasov A.V., Erokhov P.A., Indeykina M.I., Bugrova A.E., Knonikhin A.S., Moiseenko A.V., Sokolova O.S., Bonchuk A.N. Zhegalova I.V., Georgiev A.A. Mikhailov V.S., Gogoleva N.E., Gazizova G.R., Shagimardanova E.I., Gusev O.A., Lyupina Y.V. (2021). Conservative and atypical ferritins of sponges, International Journal of Molecular Sciences, 22 (16), doi: 10.3390/ijms22168635

  • Subbot A., Kondratieva S., Novikov I., Gogoleva N., Kozlova O., Chebotar I., Gazizova G., Ryabova A., Vorontsova M., Kikawada T., Shagimardanova E., Gusev O. (2021). Life-on-hold: Lanthanoids rapidly induce a reversible ametabolic state in mammalian cells, Biology, 10 (7), doi: 10.3390/biology10070607

  • Gorshkov V., Tsers I., Islamov B., Ageeva M., Gogoleva N., Mikshina P., Parfirova O., Gogoleva O., Petrova O., Gorshkova T., Gogolev, Y. (2021). The modification of plant cell wall polysaccharides in potato plants during pectobacterium atrosepticum-caused infection, Plants, 10 (7), doi: 10.3390/plants10071407

  • Yuzikhin O.S., Gogoleva N.E., Shaposhnikov A.I., Konnova T.A., Osipova E.V., Syrova D.S., Ermakova E.A., Shevchenko V.P., Nagaev I.Y., Shevchenko K.V., Myasoedov N.F., Safronova V.I., Shavarda A.L., Nizhnikov A.A., Safronova V.I., Shavarda A.L., Nizhnikov A.A., Belimov A.A., Gogolev, Y.V. (2021). Rhizosphere bacterium Rhodococcus sp. P1y metabolizes ab-scisic acid to form dehydrovomifoliol, Biomolecules, 11(3), doi: 10.3390/biom11030345

  • Kravchenko U., Gogoleva N., Kalubaka N., Kruk A., Diubo Y., Gogolev Y., Nikolaichik Y. (2021). The PhoPQ Two-Component System Is the Major Regulator of Cell Surface Properties, Stress Responses and Plant-Derived Substrate Utilisation During Development of Pectobacterium versatile-Host Plant Pathosystems, Frontiers in Microbiology 11, doi: 10.3389/fmicb.2020.621391

  • Gorshkov V., Osipova E., Ponomareva M., Ponomarev S., Gogoleva N., Petrova O., Gogoleva O., Meshcherov A., Balkin A., Vetchinkina E., Potapov K., Gogolev Y., Korzun V. (2020). Rye snow mold‐associated microdochium nivale strains inhabiting a common area: Variability in genetics, morphotype, extracellular enzymatic activities, and virulence, Journal of Fungi, 6(4): 335, doi: 10.3390/jof6040335

  • Skvortsova P.V., Faizullin D.A., Ermakova E.A., Shurpik D.N., Gogoleva N.E., Gogolev Y.V., Ziganshina S.A., Stoikov I.I., Zuev Y.F., Khairutdinov B.I. (2020). Pillar[5]arenes as potential personage for DNA compactization and gene therapy (2020) Journal of Molecular Liquids 319, 114178 doi: 10.1016/j.molliq.2020.114178

  • Tsers I., Gorshkov V., Gogoleva N., Parfirova O., Petrova O., Gogolev Y. (2020). Plant soft rot development and regulation from the viewpoint of transcriptomic profiling, Plants, 9(9): 1176, doi: 10.3390/plants9091176

  • Ziganshina E.E., Sagitov I.I., Akhmetova R.F., Saleeva G.T., Kiassov A.P., Gogoleva N.E., Shagimardanova E.I., Ziganshin A.M. (2020). Comparison of the Microbiota and Inorganic Anion Content in the Saliva of Patients with Gastroesophageal Reflux Disease and Gastroesophageal Reflux Disease-Free Individuals, BioMed Research International 13: 2681791, doi: 10.1155/2020/2681791

  • Plotnikov A.O., Balkin A.S., Gogoleva N.E., Lanzoni O., Khlopko Y.A., Cherkasov S.V., Potekhin A.A. (2019). High-Throughput Sequencing of the 16S rRNA Gene as a Survey to Analyze the Microbiomes of Free-Living Ciliates Paramecium, Microbial Ecology 78(2): 286-298, doi: 10.1007/s00248-019-01321-x

  • Burygin G.L., Kargapolova K.Y., Kryuchkova Y.V., Avdeeva E.S., Gogoleva N.E., Ponomaryova T.S., Tkachenko O.V. (2019). Ochrobactrum cytisi IPA7.2 promotes growth of potato microplants and is resistant to abiotic stress, World Journal of Microbiology and Biotechnology 35:55, doi: 10.1007/s11274-019-2633-x

  • Gogoleva N.E., Nikolaichik Y.A., Ismailov T.T., Gorshkov V.Y., Safronova V.I., Belimov A.A., Gogolev Y. (2019). Complete genome sequence of the abscisic acid-utilizing strain Novosphingobium sp. P6W, 3 Biotech, 9(3):94, doi: 10.1007/s13205-019-1625-8
     
  • Gorshkov O., Chernova T., Mokshina N., Gogoleva N., Suslov D., Tkachenko A., Gorshkova T. (2019). Intrusive growth of phloem fibers in flax stem: Integrated analysis of miRNA and mRNA expression profiles, Plants 8(2): 47, doi: 10.3390/plants8020047

  • Gorshkov V., Gubaev R., Petrova O., Daminova A., Gogoleva N., Ageeva M., Parfirova O., Prokchorchik M., Nikolaichik Y., Gogolev Y. (2018). Transcriptome profiling helps to identify potential and true molecular switches of stealth to brute force behavior in Pectobacterium atrosepticum during systemic colonization of tobacco plants, European Journal of Plant Pathology 152(4): 957-976, doi: 10.1007/s10658-018-1496-6

  • Mohammed W.S., Ziganshina E.E., Shagimardanova E.I., Gogoleva N.E., Ziganshin A.M. (2018). Comparison of intestinal bacterial and fungal communities across various xylophagous beetle larvae (Coleoptera: Cerambycidae), Scientific Reports, 8(1): 10073, doi: 10.1038/s41598-018-27342-z

  • Ziganshina E.E., Mohammed W.S., Shagimardanova E.I., Vankov P.Y., Gogoleva N.E., Ziganshin A.M. (2018). Fungal, bacterial, and archaeal diversity in the digestive tract of several beetle larvae (coleoptera), BioMed Research International 6765438, doi: 10.1155/2018/6765438

 

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